OK, if you do it like I did you will need a manifold off of a 84+ pup w/ a N/A Diesel. These manifolds have a 2" outlet compared to the stock 1 5/8" manifold on the 81-83's. Then you can make the pipe bigger AFTER it passes the e-brake cable linkage bolted to the firewall, I have 2" on mine and it has formed a dent in my downpipe from the motor twisting about and hitting the linkage braket/fork/whatever it's called. I would suggest you route your exhaust from the manifold 2" put a flex-pipe where the stock one was and then up the diameter to 3" after the flex peice.
I have had my exhaust disconnected (with the stock pipe) from the flex-pipe back, this makes it sound like a pissed-off pig with PMS; however since you'll have 3" exhaust you'll have a nice deep growl to it even w/o a flowmaster. You'd need a muffler to pass emissions. You might want to put a fake one in place or find an inspector that won't get nosey and check your exhaust. Bring it by sometime at Terry labonte and let me take a peak once it's all done.
Good Luck
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-Old ride-82 Luv diesel 5spd with some upgrades
-Past rides-82 Sierra, 78 Coupe De'Ville, 91 2dr Blazer, 86 RX7, 86 Porsche 944T (rear-ended and totaled)
-Curr. rides- 1970 Ford LTD 4dr, 390 4Bbl, 2nd owner! With a few Extras

00' Civic beater...